PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0054200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 239aa    MW: 25900.6 Da    PI: 5.0463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0054200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-1178125454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRd++N++f eL  +l +    + +K +Ka+iL  Av+ +++L
  Spipo14G0054200  78 SKACREKMRRDKLNDRFLELGAILEPG---KPPKIDKAAILSDAVRMVNQL 125
                      5678**********************9...99***************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-964130No hitNo description
PROSITE profilePS5088812.75474125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1378147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-978125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1378149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-980131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGTAENPSWL FDCPLMEEIP AEGGDFVGAG GGFFWPPQAF NGASNASIGF DGSVDSDSSK  60
ELPSRKRARP EAASLPSSKA CREKMRRDKL NDRFLELGAI LEPGKPPKID KAAILSDAVR  120
MVNQLRSEAQ KLKEANEGLQ ETIKELKAEK NELRDEKQRL KAEKESLEQQ VKAMSVPPSY  180
VPHSPMMPPG PFSVPRPAAG GGKLMMPVIG FSGFPMWQYM PPADVDTSQD VETCPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931430.11e-111PREDICTED: transcription factor ILR3-like
SwissprotQ9FH373e-86ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0E0I1Z21e-100A0A0E0I1Z2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0Q9I21e-100A0A0E0Q9I2_ORYRU; Uncharacterized protein
STRINGGSMUA_Achr3P23080_0017e-98(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-82bHLH family protein